STRINGSTRING
Bra004831 protein (Brassica rapa) - STRING interaction network
"Bra004831" - AT3G60110 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra004831AT3G60110 (E=1e-087) | DNA binding (623 aa)    
Predicted Functional Partners:
Bra016060
AT1G72416 (E=1e-061) | heat shock protein binding (176 aa)
           
  0.414
Bra033505
AT4G15730 (E=5e-220) | zinc ion binding (936 aa)
           
  0.406
Bra019362
AT4G22740 (E=5e-058) | glycine-rich protein (320 aa)
           
  0.406
Bra003514
AT3G62900 (E=0.0) | zinc ion binding (1321 aa)
           
  0.406
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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