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Bra004843 protein (Brassica rapa) - STRING interaction network
"Bra004843" - AT2G44525 in Brassica rapa
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra004843AT2G44525 (E=5e-087) | unknown protein (170 aa)    
Predicted Functional Partners:
Bra010822
ATCG01110 (E=5e-030) NDHH | Encodes the 49KDa plastid NAD(P)H dehydrogenase subunit H protein. Its transcription is regulated by an ndhF-specific plastid sigma factor, SIG4. (71 aa)
     
  0.879
Bra025980
AT1G17350 (E=1e-069) | auxin-induced-related / indole-3-acetic acid induced-related (194 aa)
     
  0.863
Bra016059
AT1G72420 (E=5e-065) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- cellular_component unknown; EXPRESSED IN- 22 plant structures; EXPRESSED DURING- 13 growth stages; CONTAINS InterPro DOMAIN/s- NADH-ubiquinone oxidoreductase complex I intermediate-associated protein 30 (InterPro-IPR013857); BEST Arabidopsis thaliana protein match is- auxin-induced-related / indole-3-acetic acid induced-related (TAIR-AT1G17350.1); Has 408 Blast hits to 408 proteins in 142 species- Archae - 0; Bacteria - 97; Metazoa - 96; Fungi - 57; Plants - 46; Viruses [...] (225 aa)
     
  0.863
Bra024538
AT1G22800 (E=6e-177) | methyltransferase (356 aa)
     
  0.837
Bra012344
AT1G22800 (E=8e-045) | methyltransferase (145 aa)
     
  0.837
Bra038600
AT5G63000 (E=1e-104) | unknown protein (201 aa)
       
    0.831
Bra041055
ATCG01090 (E=2e-075) NDHI | Encodes subunit of the chloroplast NAD(P)H dehydrogenase complex ; NDH shuttles electrons from NAD(P)H-plastoquinone, via FMN and iron-sulfur (Fe-S) centers, to quinones in the photosynthetic chain and possibly in a chloroplast respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation, and thus conserves the redox energy in a proton gradient (172 aa)
     
  0.829
Bra035083
AT1G79010 (E=6e-116) | NADH-ubiquinone oxidoreductase 23 kDa subunit, mitochondrial (TYKY) (222 aa)
     
  0.829
Bra026031
AT1G16680 (E=8e-134) | DNAJ heat shock N-terminal domain-containing protein / S-locus protein, putative (654 aa)
     
  0.829
Bra003627
AT1G79010 (E=1e-113) | NADH-ubiquinone oxidoreductase 23 kDa subunit, mitochondrial (TYKY) (222 aa)
     
  0.829
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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