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Bra004848 protein (Brassica rapa) - STRING interaction network
"Bra004848" - AT2G44580 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra004848AT2G44580 (E=1e-166) | protein binding / zinc ion binding (384 aa)    
Predicted Functional Partners:
Bra030587
AT1G04730 (E=2e-030) | AAA-type ATPase family protein (274 aa)
     
 
  0.960
Bra015344
AT1G04730 (E=0.0) | AAA-type ATPase family protein (1622 aa)
     
 
  0.960
Bra028299
AT5G52220 (E=2e-041) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- cellular_component unknown; EXPRESSED IN- 18 plant structures; EXPRESSED DURING- 13 growth stages; CONTAINS InterPro DOMAIN/s- Chromosome transmission fidelity protein 8 (InterPro-IPR018607); Has 85 Blast hits to 85 proteins in 45 species- Archae - 0; Bacteria - 0; Metazoa - 54; Fungi - 13; Plants - 11; Viruses - 0; Other Eukaryotes - 7 (source- NCBI BLink). (118 aa)
       
 
  0.951
Bra013317
AT4G18770 (E=2e-026) MYB98, AtMYB98 | MYB98 (myb domain protein 98); DNA binding / transcription factor (742 aa)
     
 
  0.943
Bra026593
AT2G02480 (E=5e-043) STI | STI (STICHEL); ATP binding / DNA binding / DNA-directed DNA polymerase (373 aa)
     
 
  0.939
Bra017941
AT1G21690 (E=1e-180) emb1968 | emb1968 (embryo defective 1968); ATP binding / ATPase/ DNA binding / DNA clamp loader/ nucleoside-triphosphatase/ nucleotide binding (339 aa)
     
 
  0.939
Bra016410
AT1G21690 (E=3e-175) emb1968 | emb1968 (embryo defective 1968); ATP binding / ATPase/ DNA binding / DNA clamp loader/ nucleoside-triphosphatase/ nucleotide binding (340 aa)
     
 
  0.939
Bra019208
AT4G24790 (E=1e-295) | ATP binding / DNA binding / DNA-directed DNA polymerase (902 aa)
     
 
  0.854
Bra026217
AT1G14460 (E=0.0) | DNA polymerase-related (1025 aa)
     
 
  0.851
Bra025061
AT5G45720 (E=1e-212) | ATP binding / DNA binding / DNA-directed DNA polymerase/ nucleoside-triphosphatase/ nucleotide binding (750 aa)
     
 
  0.851
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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