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Bra004850 protein (Brassica rapa) - STRING interaction network
"Bra004850" - AT2G44610 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra004850AT2G44610 (E=9e-112) RAB6, ATRABH1B, ATRAB6A, RAB6A | RAB6A; GTP binding / protein binding (208 aa)    
Predicted Functional Partners:
Bra007608
AT5G28350 (E=0.0) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; EXPRESSED IN- cultured cell; CONTAINS InterPro DOMAIN/s- Protein of unknown function DUF1339 (InterPro-IPR009771), WD40 repeat (InterPro-IPR001680), WD40/YVTN repeat-like (InterPro-IPR015943), Quinoprotein amine dehydrogenase, beta chain-like (InterPro-IPR011044); BEST Arabidopsis thaliana protein match is- unknown protein (TAIR-AT3G61480.1); Has 271 Blast hits to 226 proteins in 106 species- Archae - 0; Bacteria - 9; Metazoa - 133; Fungi - 64; Plants - 30; Viruses - 0; Other Eukaryot [...] (1114 aa)
       
  0.966
Bra016149
AT1G71270 (E=0.0) POK, TTD8, ATVPS52 | POK (POKY POLLEN TUBE) (708 aa)
     
  0.965
Bra028630
AT5G09550 (E=3e-248) | RAB GDP-dissociation inhibitor (613 aa)
     
 
  0.941
Bra014523
AT3G59920 (E=1e-250) ATGDI2 | ATGDI2 (RAB GDP DISSOCIATION INHIBITOR 2); RAB GDP-dissociation inhibitor (444 aa)
     
 
  0.941
Bra009390
AT5G09550 (E=2e-249) | RAB GDP-dissociation inhibitor (445 aa)
     
 
  0.941
Bra007493
AT3G59920 (E=1e-239) ATGDI2 | ATGDI2 (RAB GDP DISSOCIATION INHIBITOR 2); RAB GDP-dissociation inhibitor (445 aa)
     
 
  0.941
Bra007490
AT3G59920 (E=5e-064) ATGDI2 | ATGDI2 (RAB GDP DISSOCIATION INHIBITOR 2); RAB GDP-dissociation inhibitor (406 aa)
     
 
  0.941
Bra006026
AT5G09550 (E=5e-234) | RAB GDP-dissociation inhibitor (439 aa)
     
 
  0.941
Bra004805
AT2G44100 (E=2e-252) ATGDI1, AT-GDI1 | ATGDI1 (ARABIDOPSIS THALIANA GUANOSINE NUCLEOTIDE DIPHOSPHATE DISSOCIATION INHIBITOR 1); RAB GDP-dissociation inhibitor (444 aa)
     
 
  0.941
Bra003395
AT3G59920 (E=4e-243) ATGDI2 | ATGDI2 (RAB GDP DISSOCIATION INHIBITOR 2); RAB GDP-dissociation inhibitor (444 aa)
     
 
  0.941
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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