STRINGSTRING
Bra004852 protein (Brassica rapa) - STRING interaction network
"Bra004852" - AT2G44640 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra004852AT2G44640 (E=2e-192) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- mitochondrion, chloroplast, plasma membrane, plastid, chloroplast envelope; EXPRESSED IN- 23 plant structures; EXPRESSED DURING- 13 growth stages; BEST Arabidopsis thaliana protein match is- PDE320 (PIGMENT DEFECTIVE 320) (TAIR-AT3G06960.1); Has 25 Blast hits to 24 proteins in 8 species- Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 24; Viruses - 0; Other Eukaryotes - 1 (source- NCBI BLink). (463 aa)    
Predicted Functional Partners:
Bra029612
AT3G06970 (E=7e-023) | RNA binding / nucleic acid binding / nucleotide binding (287 aa)
           
  0.526
Bra001228
AT3G06970 (E=5e-029) | RNA binding / nucleic acid binding / nucleotide binding (362 aa)
           
  0.526
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
Server load: low (8%) [HD]