STRINGSTRING
Bra004854 protein (Brassica rapa) - STRING interaction network
"Bra004854" - AT2G44660 in Brassica rapa
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra004854AT2G44660 (E=1e-233) | transferase, transferring glycosyl groups / transferase, transferring hexosyl groups (504 aa)    
Predicted Functional Partners:
Bra028183
AT5G38460 (E=7e-260) | ALG6, ALG8 glycosyltransferase family protein (513 aa)
     
0.993
Bra005722
AT5G02410 (E=2e-227) | DIE2/ALG10 family (508 aa)
     
  0.948
Bra035913
AT5G61790 (E=5e-239) CNX1, ATCNX1 | calnexin 1 (CNX1) (535 aa)
     
 
  0.729
Bra029308
AT5G61790 (E=1e-203) CNX1, ATCNX1 | calnexin 1 (CNX1) (877 aa)
     
 
  0.729
Bra019613
AT5G61790 (E=4e-252) CNX1, ATCNX1 | calnexin 1 (CNX1) (544 aa)
     
 
  0.729
Bra037156
AT5G66680 (E=1e-215) DGL1 | DGL1; dolichyl-diphosphooligosaccharide-protein glycotransferase ; Essential subunit of the N-oligosaccharyl transferase (OST) complex which catalyzes the transfer of a high mannose oligosaccharide from a lipid-linked oligosaccharide donor to an asparagine residue within an Asn-X-Ser/Thr consensus motif in nascent polypeptide chains (435 aa)
     
 
  0.602
Bra031818
AT5G66680 (E=7e-023) DGL1 | DGL1; dolichyl-diphosphooligosaccharide-protein glycotransferase ; Essential subunit of the N-oligosaccharyl transferase (OST) complex which catalyzes the transfer of a high mannose oligosaccharide from a lipid-linked oligosaccharide donor to an asparagine residue within an Asn-X-Ser/Thr consensus motif in nascent polypeptide chains (203 aa)
     
 
  0.602
Bra012091
AT5G66680 (E=7e-215) DGL1 | DGL1; dolichyl-diphosphooligosaccharide-protein glycotransferase ; Essential subunit of the N-oligosaccharyl transferase (OST) complex which catalyzes the transfer of a high mannose oligosaccharide from a lipid-linked oligosaccharide donor to an asparagine residue within an Asn-X-Ser/Thr consensus motif in nascent polypeptide chains (437 aa)
     
 
  0.602
Bra005029
AT2G39630 (E=6e-155) | glycosyl transferase family 2 protein (414 aa)
     
 
  0.533
Bra000139
AT2G39630 (E=6e-168) | glycosyl transferase family 2 protein (336 aa)
     
 
  0.533
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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