STRINGSTRING
Bra004855 protein (Brassica rapa) - STRING interaction network
"Bra004855" - AT2G44670 in Brassica rapa
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra004855AT2G44670 (E=3e-038) | senescence-associated protein-related (91 aa)    
Predicted Functional Partners:
Bra031694
AT1G09980 (E=0.0) | INVOLVED IN- biological_process unknown; LOCATED IN- mitochondrion; EXPRESSED IN- 22 plant structures; EXPRESSED DURING- 13 growth stages; CONTAINS InterPro DOMAIN/s- Protein of unknown function DUF676, hydrolase-like (InterPro-IPR007751); BEST Arabidopsis thaliana protein match is- ZW18 (TAIR-AT1G58350.2); Has 342 Blast hits to 275 proteins in 70 species- Archae - 0; Bacteria - 0; Metazoa - 214; Fungi - 0; Plants - 45; Viruses - 0; Other Eukaryotes - 83 (source- NCBI BLink). (794 aa)
           
  0.591
Bra027869
AT1G58350 (E=0.0) ZW18 | ZW18 (791 aa)
           
  0.591
Bra019970
AT1G09980 (E=0.0) | INVOLVED IN- biological_process unknown; LOCATED IN- mitochondrion; EXPRESSED IN- 22 plant structures; EXPRESSED DURING- 13 growth stages; CONTAINS InterPro DOMAIN/s- Protein of unknown function DUF676, hydrolase-like (InterPro-IPR007751); BEST Arabidopsis thaliana protein match is- ZW18 (TAIR-AT1G58350.2); Has 342 Blast hits to 275 proteins in 70 species- Archae - 0; Bacteria - 0; Metazoa - 214; Fungi - 0; Plants - 45; Viruses - 0; Other Eukaryotes - 83 (source- NCBI BLink). (787 aa)
           
  0.591
Bra037646
AT2G44520 (E=3e-169) COX10 | COX10 (cytochrome c oxidase 10); prenyltransferase/ protoheme IX farnesyltransferase (424 aa)
           
  0.514
Bra004837
AT2G44460 (E=6e-267) BGLU28 | BGLU28 (BETA GLUCOSIDASE 28); catalytic/ cation binding / hydrolase, hydrolyzing O-glycosyl compounds (1167 aa)
           
  0.483
Bra012889
AT3G50770 (E=3e-076) | calmodulin-related protein, putative (203 aa)
           
  0.483
Bra004885
AT2G45040 (E=2e-155) | matrix metalloproteinase (339 aa)
           
  0.446
Bra004842
AT2G44520 (E=4e-081) COX10 | COX10 (cytochrome c oxidase 10); prenyltransferase/ protoheme IX farnesyltransferase (282 aa)
           
  0.433
Bra030301
AT3G51060 (E=9e-036) STY1, SRS1 | STY1 (STYLISH 1); protein heterodimerization/ transcription factor (190 aa)
           
  0.404
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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