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Bra004870 protein (Brassica rapa) - STRING interaction network
"Bra004870" - AT5G47430 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra004870AT5G47430 (E=4e-011) | zinc ion binding (117 aa)    
Predicted Functional Partners:
Bra023416
AT5G13480 (E=3e-256) FY | FY; protein binding (647 aa)
     
  0.973
Bra006202
AT5G13480 (E=7e-266) FY | FY; protein binding (662 aa)
     
  0.973
Bra022557
AT5G51660 (E=0.0) CPSF160, ATCPSF160 | CPSF160; nucleic acid binding (1448 aa)
     
  0.972
Bra009712
AT5G23880 (E=0.0) EMB1265, CPSF100, ESP5, ATCPSF100 | CPSF100 (CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR 100); DNA binding / protein binding (739 aa)
     
  0.972
Bra031460
AT1G61010 (E=0.0) CPSF73-I | CPSF73-I (CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR 73-I); protein binding (694 aa)
     
  0.971
Bra038629
AT5G63420 (E=0.0) emb2746 | emb2746 (embryo defective 2746); DNA binding / catalytic/ hydrolase (907 aa)
     
  0.971
Bra014881
AT1G30460 (E=3e-141) CPSF30, ATCPSF30 | CPSF30; RNA binding / calmodulin binding / endonuclease/ nucleic acid binding / protein binding (580 aa)
     
  0.971
Bra010767
AT1G30460 (E=2e-211) CPSF30, ATCPSF30 | CPSF30; RNA binding / calmodulin binding / endonuclease/ nucleic acid binding / protein binding (630 aa)
     
  0.971
Bra035636
AT5G56930 (E=2e-111) emb1789 | emb1789 (embryo defective 1789); nucleic acid binding / zinc ion binding (642 aa)
     
  0.970
Bra002780
AT5G56930 (E=5e-023) emb1789 | emb1789 (embryo defective 1789); nucleic acid binding / zinc ion binding (132 aa)
     
  0.970
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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