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Bra004873 protein (Brassica rapa) - STRING interaction network
"Bra004873" - AT2G44840 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra004873AT2G44840 (E=3e-086) ATERF13, EREBP, ERF13 | ERF13 (ETHYLENE-RESPONSIVE ELEMENT BINDING FACTOR 13); DNA binding / transcription factor (232 aa)    
Predicted Functional Partners:
Bra038341
AT1G68880 (E=1e-034) AtbZIP | AtbZIP (Arabidopsis thaliana basic leucine-zipper 8); DNA binding / transcription factor (120 aa)
           
  0.573
Bra004160
AT1G66340 (E=0.0) ETR1, EIN1, ETR | ETR1 (ETHYLENE RESPONSE 1); ethylene binding / protein histidine kinase/ two-component response regulator (736 aa)
           
  0.537
Bra004449
AT2G40940 (E=0.0) ERS1, ERS | ERS1 (ETHYLENE RESPONSE SENSOR 1); ethylene binding / protein histidine kinase/ receptor (611 aa)
           
  0.507
Bra030635
AT1G06040 (E=3e-120) STO | STO (SALT TOLERANCE); DNA binding / protein binding / transcription factor/ zinc ion binding (241 aa)
           
  0.505
Bra015469
AT1G06040 (E=6e-108) STO | STO (SALT TOLERANCE); DNA binding / protein binding / transcription factor/ zinc ion binding (243 aa)
           
  0.505
Bra009464
AT5G04340 (E=2e-071) C2H2, CZF2, ZAT6 | ZAT6 (ZINC FINGER OF ARABIDOPSIS THALIANA 6); nucleic acid binding / transcription factor/ zinc ion binding (228 aa)
     
   
  0.498
Bra001802
AT3G20770 (E=4e-149) EIN3 | EIN3 (ETHYLENE-INSENSITIVE3); transcription factor (581 aa)
           
  0.473
Bra010463
AT4G25490 (E=9e-022) CBF1, DREB1B, ATCBF1 | CBF1 (C-REPEAT/DRE BINDING FACTOR 1); DNA binding / transcription activator/ transcription factor (224 aa)
     
   
  0.470
Bra006691
AT5G59820 (E=1e-072) RHL41, ZAT12 | RHL41 (RESPONSIVE TO HIGH LIGHT 41); nucleic acid binding / transcription factor/ zinc ion binding (159 aa)
     
   
  0.438
Bra006691.1-P
AT5G59820 (E=1e-072) RHL41, ZAT12 | RHL41 (RESPONSIVE TO HIGH LIGHT 41); nucleic acid binding / transcription factor/ zinc ion binding (159 aa)
     
   
  0.438
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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