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Bra004882 protein (Brassica rapa) - STRING interaction network
"Bra004882" - AT2G45000 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra004882AT2G45000 (E=1e-107) EMB2766 | EMB2766 (EMBRYO DEFECTIVE 2766); structural constituent of nuclear pore (784 aa)    
Predicted Functional Partners:
Bra010959
AT1G24310 (E=2e-156) | unknown protein (399 aa)
     
  0.999
Bra015851
AT1G75340 (E=1e-081) | zinc finger (CCCH-type) family protein (398 aa)
       
      0.998
Bra009125
AT5G05680 (E=0.0) | nuclear pore complex protein-related (812 aa)
     
  0.992
Bra016924
AT2G41620 (E=0.0) | nucleoporin interacting component family protein (863 aa)
     
  0.977
Bra007321
AT2G41620 (E=0.0) | nucleoporin interacting component family protein (862 aa)
     
  0.977
Bra036599
AT5G26920 (E=4e-144) CBP60G | CBP60G (CAM-BINDING PROTEIN 60-LIKE.G); calmodulin binding (589 aa)
     
  0.975
Bra035162
AT1G80670 (E=4e-193) | transducin family protein / WD-40 repeat family protein (348 aa)
     
  0.975
Bra009083
AT5G26120 (E=5e-080) ATASD2, ASD2 | ASD2 (ALPHA-L-ARABINOFURANOSIDASE 2); alpha-N-arabinofuranosidase/ hydrolase, acting on glycosyl bonds (788 aa)
     
  0.975
Bra008447
AT1G80670 (E=2e-197) | transducin family protein / WD-40 repeat family protein (346 aa)
     
  0.975
Bra003577
AT1G80670 (E=5e-152) | transducin family protein / WD-40 repeat family protein (276 aa)
     
  0.975
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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