STRINGSTRING
Bra004887 protein (Brassica rapa) - STRING interaction network
"Bra004887" - AT3G60540 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra004887AT3G60540 (E=1e-018) | sec61beta family protein (83 aa)    
Predicted Functional Partners:
Bra013510
AT4G21180 (E=2e-306) ATERDJ2B | ATERDJ2B; heat shock protein binding / unfolded protein binding (663 aa)
     
  0.996
Bra008501
AT1G79940 (E=3e-025) ATERDJ2A | ATERDJ2A; heat shock protein binding / unfolded protein binding (357 aa)
     
  0.996
Bra003539
AT1G79940 (E=0.0) ATERDJ2A | ATERDJ2A; heat shock protein binding / unfolded protein binding (686 aa)
     
  0.996
Bra000627
AT4G24920 (E=2e-025) | protein transport protein SEC61 gamma subunit, putative (69 aa)
     
  0.995
Bra019202.1-P
AT4G24920 (E=2e-025) | protein transport protein SEC61 gamma subunit, putative (69 aa)
     
  0.995
Bra018047
AT3G48570 (E=6e-022) | protein transport protein SEC61 gamma subunit, putative (69 aa)
     
  0.995
Bra013846.1-P
AT4G24920 (E=2e-025) | protein transport protein SEC61 gamma subunit, putative (69 aa)
     
  0.995
Bra000627.1-P
AT4G24920 (E=2e-025) | protein transport protein SEC61 gamma subunit, putative (69 aa)
     
  0.995
Bra032303
AT1G29310 (E=1e-267) | P-P-bond-hydrolysis-driven protein transmembrane transporter (475 aa)
     
  0.993
Bra005441
AT2G34250 (E=1e-270) | protein transport protein sec61, putative (475 aa)
     
  0.993
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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