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Bra004893 protein (Brassica rapa) - STRING interaction network
"Bra004893" - AT2G45240 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra004893AT2G45240 (E=6e-227) MAP1A | MAP1A (METHIONINE AMINOPEPTIDASE 1A); aminopeptidase/ metalloexopeptidase (403 aa)    
Predicted Functional Partners:
Bra026114
AT1G15730 (E=3e-176) | PRLI-interacting factor L, putative (448 aa)
     
 
  0.904
Bra024711
AT1G26520 (E=2e-189) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- cellular_component unknown; EXPRESSED IN- 22 plant structures; EXPRESSED DURING- 13 growth stages; CONTAINS InterPro DOMAIN/s- Cobalamin (vitamin B12) biosynthesis CobW-like (InterPro-IPR003495), Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal (InterPro-IPR011629); BEST Arabidopsis thaliana protein match is- PRLI-interacting factor L, putative (TAIR-AT1G15730.1); Has 5407 Blast hits to 5334 proteins in 932 species- Archae - 52; Bacteria - 3259; Metazoa - 131; [...] (363 aa)
     
 
  0.904
Bra008470
AT1G80480 (E=2e-177) PTAC17 | PTAC17 (PLASTID TRANSCRIPTIONALLY ACTIVE17) (455 aa)
     
 
  0.904
Bra040978
ATCG00740 (E=1e-124) RPOA | RNA polymerase alpha subunit (475 aa)
   
   
  0.808
Bra040980
ATCG00780 (E=1e-038) RPL14 | encodes a chloroplast ribosomal protein L14, a constituent of the large subunit of the ribosomal complex (171 aa)
   
 
  0.797
Bra015924
AT1G74260 (E=0.0) PUR4 | PUR4 (purine biosynthesis 4); ATP binding / catalytic/ phosphoribosylformylglycinamidine synthase (1516 aa)
   
   
  0.783
Bra007382
AT3G58140 (E=2e-226) | phenylalanyl-tRNA synthetase class IIc family protein (430 aa)
   
   
  0.782
Bra003322
AT3G58140 (E=4e-232) | phenylalanyl-tRNA synthetase class IIc family protein (426 aa)
   
   
  0.782
Bra011081
AT4G29060 (E=1e-177) emb2726 | emb2726 (embryo defective 2726); RNA binding / translation elongation factor ; Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome (1770 aa)
   
   
  0.775
Bra015131
AT2G04040 (E=8e-223) ATDTX1, TX1 | TX1; antiporter/ multidrug efflux pump/ multidrug transporter/ transporter (761 aa)
   
 
  0.770
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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