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Bra004896 protein (Brassica rapa) - STRING interaction network
"Bra004896" - AT2G45330 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra004896AT2G45330 (E=4e-108) emb1067 | emb1067 (embryo defective 1067); tRNA 2’-phosphotransferase/ transferase, transferring phosphorus-containing groups (260 aa)    
Predicted Functional Partners:
Bra026706
AT1G16800 (E=0.0) | tRNA-splicing endonuclease positive effector-related (2164 aa)
           
  0.448
Bra018153
AT3G47390 (E=5e-292) | cytidine/deoxycytidylate deaminase family protein (587 aa)
              0.437
Bra035800
AT3G20250 (E=0.0) APUM5 | APUM5 (Arabidopsis Pumilio 5); RNA binding / binding (939 aa)
           
  0.416
Bra011074
AT4G28990 (E=1e-070) | RNA-binding protein-related (330 aa)
           
  0.412
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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