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Bra004898 protein (Brassica rapa) - STRING interaction network
"Bra004898" - AT2G45290 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra004898AT2G45290 (E=0.0) | transketolase, putative (736 aa)    
Predicted Functional Partners:
Bra008831
AT5G13420 (E=6e-201) | transaldolase, putative (439 aa)
 
  0.991
Bra006197
AT5G13420 (E=5e-198) | transaldolase, putative (437 aa)
 
  0.991
Bra023410
AT5G13420 (E=2e-201) | transaldolase, putative (440 aa)
 
  0.991
Bra019748
AT1G12230 (E=2e-195) | transaldolase, putative (409 aa)
   
  0.991
Bra027631
AT3G01850 (E=2e-117) | ribulose-phosphate 3-epimerase, cytosolic, putative / pentose-5-phosphate 3-epimerase, putative (281 aa)
   
  0.987
Bra012963
AT5G61410 (E=1e-133) RPE, EMB2728 | RPE; catalytic/ ribulose-phosphate 3-epimerase (282 aa)
   
  0.987
Bra009244
AT5G61410 (E=1e-137) RPE, EMB2728 | RPE; catalytic/ ribulose-phosphate 3-epimerase (275 aa)
   
  0.987
Bra040213
AT1G13440 (E=2e-168) GAPC-2, GAPC2 | GAPC2 (GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE C2); NAD or NADH binding / binding / catalytic/ glyceraldehyde-3-phosphate dehydrogenase (phosphorylating)/ glyceraldehyde-3-phosphate dehydrogenase (338 aa)
   
  0.983
Bra040146
AT1G13440 (E=1e-167) GAPC-2, GAPC2 | GAPC2 (GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE C2); NAD or NADH binding / binding / catalytic/ glyceraldehyde-3-phosphate dehydrogenase (phosphorylating)/ glyceraldehyde-3-phosphate dehydrogenase (338 aa)
   
  0.983
Bra034927
AT1G42970 (E=7e-234) GAPB | GAPB (GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE B SUBUNIT); glyceraldehyde-3-phosphate dehydrogenase (NADP+)/ glyceraldehyde-3-phosphate dehydrogenase (448 aa)
   
  0.983
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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