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Bra004904 protein (Brassica rapa) - STRING interaction network
"Bra004904" - AT2G45360 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra004904AT2G45360 (E=3e-092) | unknown protein (221 aa)    
Predicted Functional Partners:
Bra015042
AT3G24460 (E=2e-210) | TMS membrane family protein / tumour differentially expressed (TDE) family protein (406 aa)
           
  0.591
Bra001949
AT3G24460 (E=3e-210) | TMS membrane family protein / tumour differentially expressed (TDE) family protein (411 aa)
           
  0.591
Bra036805
AT5G67370 (E=6e-154) | unknown protein (320 aa)
           
  0.483
Bra022221
AT3G17520 (E=1e-077) | late embryogenesis abundant domain-containing protein / LEA domain-containing protein (298 aa)
           
  0.483
Bra034880
AT4G13345 (E=3e-193) MEE55 | MEE55 (maternal effect embryo arrest 55) (418 aa)
           
  0.422
Bra026729
AT1G16180 (E=8e-189) | TMS membrane family protein / tumour differentially expressed (TDE) family protein (413 aa)
           
  0.422
Bra021835
AT2G33205 (E=9e-167) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- membrane; CONTAINS InterPro DOMAIN/s- TMS membrane protein/tumour differentially expressed protein (InterPro-IPR005016); BEST Arabidopsis thaliana protein match is- MEE55 (maternal effect embryo arrest 55) (TAIR-AT4G13345.1); Has 602 Blast hits to 593 proteins in 136 species- Archae - 0; Bacteria - 0; Metazoa - 380; Fungi - 90; Plants - 84; Viruses - 0; Other Eukaryotes - 48 (source- NCBI BLink). (551 aa)
           
  0.422
Bra020763
AT3G06170 (E=7e-198) | TMS membrane family protein / tumour differentially expressed (TDE) family protein (408 aa)
           
  0.422
Bra016641
AT1G16250 (E=6e-219) | kelch repeat-containing F-box family protein (821 aa)
           
  0.422
Bra015111
AT3G24460 (E=9e-023) | TMS membrane family protein / tumour differentially expressed (TDE) family protein (97 aa)
           
  0.422
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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