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Bra004905 protein (Brassica rapa) - STRING interaction network
"Bra004905" - AT2G45380 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra004905AT2G45380 (E=2e-078) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- cellular_component unknown; EXPRESSED IN- inflorescence meristem, flower, cultured cell; EXPRESSED DURING- petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is- calcium ion binding (TAIR-AT4G34070.1); Has 72 Blast hits to 71 proteins in 18 species- Archae - 0; Bacteria - 0; Metazoa - 15; Fungi - 0; Plants - 50; Viruses - 0; Other Eukaryotes - 7 (source- NCBI BLink). (267 aa)    
Predicted Functional Partners:
Bra040243
AT3G05950 (E=5e-122) | germin-like protein, putative (229 aa)
           
  0.406
Bra036146
Uncharacterized protein (164 aa)
           
  0.406
Bra031736
AT1G11020 (E=5e-132) | zinc finger (C3HC4-type RING finger) family protein (312 aa)
           
  0.406
Bra025043
AT5G46030 (E=4e-039) | unknown protein (126 aa)
           
  0.406
Bra022011
AT5G46030 (E=4e-039) | unknown protein (125 aa)
           
  0.406
Bra020651
AT5G49280 (E=1e-006) | hydroxyproline-rich glycoprotein family protein (166 aa)
           
  0.406
Bra018414
AT1G11020 (E=9e-137) | zinc finger (C3HC4-type RING finger) family protein (320 aa)
           
  0.406
Bra016019
AT1G73066 (E=1e-280) | protein binding (604 aa)
           
  0.406
Bra010696.1-P
AT4G39200 (E=2e-034) | 40S ribosomal protein S25 (RPS25E) (108 aa)
           
  0.406
Bra004685
AT2G42350 (E=1e-072) | zinc finger (C3HC4-type RING finger) family protein (216 aa)
           
  0.406
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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