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Bra004912 protein (Brassica rapa) - STRING interaction network
"Bra004912" - AT2G45440 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra004912AT2G45440 (E=4e-198) DHDPS2 | DHDPS2 (DIHYDRODIPICOLINATE SYNTHASE); catalytic/ dihydrodipicolinate synthase/ lyase (365 aa)    
Predicted Functional Partners:
Bra023169
AT1G31230 (E=0.0) AK-HSDH I, AK-HSDH | AK-HSDH I (ASPARTATE KINASE-HOMOSERINE DEHYDROGENASE I); aspartate kinase/ homoserine dehydrogenase (909 aa)
   
 
  0.978
Bra013425
AT4G19710 (E=0.0) AK-HSDH II, AK-HSDH | bifunctional aspartate kinase/homoserine dehydrogenase, putative / AK-HSDH, putative (923 aa)
   
 
  0.978
Bra026186
AT1G14810 (E=1e-196) | semialdehyde dehydrogenase family protein (375 aa)
   
 
  0.964
Bra016680
AT1G14810 (E=4e-182) | semialdehyde dehydrogenase family protein (344 aa)
   
 
  0.964
Bra000338
AT2G44040 (E=2e-173) | dihydrodipicolinate reductase family protein (348 aa)
         
  0.943
Bra037900
AT1G14810 (E=4e-034) | semialdehyde dehydrogenase family protein (151 aa)
   
 
  0.840
Bra008840
AT5G13280 (E=2e-258) AK-LYS1, AK1, AK | AK-LYS1 (ASPARTATE KINASE 1); aspartate kinase (551 aa)
 
 
  0.838
Bra006235
AT5G14060 (E=1e-273) CARAB-AK-LYS | CARAB-AK-LYS; amino acid binding / aspartate kinase (537 aa)
 
 
  0.837
Bra023401
AT5G13280 (E=2e-205) AK-LYS1, AK1, AK | AK-LYS1 (ASPARTATE KINASE 1); aspartate kinase (554 aa)
 
 
  0.835
Bra008931
AT5G11880 (E=7e-254) | diaminopimelate decarboxylase, putative / DAP carboxylase, putative (486 aa)
 
   
  0.811
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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