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Bra004917 protein (Brassica rapa) - STRING interaction network
"Bra004917" - AT2G45500 in Brassica rapa
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra004917AT2G45500 (E=4e-125) | ATP binding / nucleoside-triphosphatase/ nucleotide binding (319 aa)    
Predicted Functional Partners:
Bra031571
AT1G07370 (E=5e-142) PCNA1 | PCNA1 (PROLIFERATING CELLULAR NUCLEAR ANTIGEN); DNA binding / DNA polymerase processivity factor/ protein binding ; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase’s processibility during elongation of the leading strand (263 aa)
   
  0.933
Bra018377
AT1G07370 (E=2e-144) PCNA1 | PCNA1 (PROLIFERATING CELLULAR NUCLEAR ANTIGEN); DNA binding / DNA polymerase processivity factor/ protein binding ; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase’s processibility during elongation of the leading strand (263 aa)
   
  0.933
Bra040419
AT3G63000 (E=7e-209) NPL41 | NPL41 (NPL4-LIKE PROTEIN 1) (413 aa)
     
  0.867
Bra003519
AT3G63000 (E=2e-024) NPL41 | NPL41 (NPL4-LIKE PROTEIN 1) (89 aa)
     
  0.867
Bra038084
AT4G15420 (E=3e-280) | PRLI-interacting factor K (560 aa)
     
  0.804
Bra035652
AT2G29070 (E=2e-148) | ubiquitin fusion degradation UFD1 family protein (308 aa)
     
  0.804
Bra030307
AT2G21270 (E=9e-137) | ubiquitin fusion degradation UFD1 family protein (321 aa)
     
  0.804
Bra004709
AT2G42580 (E=3e-140) TTL3, VIT | TTL3 (TETRATRICOPETIDE-REPEAT THIOREDOXIN-LIKE 3); binding / protein binding (657 aa)
   
 
  0.752
Bra029520
AT4G04860 (E=2e-127) DER2.2 | DER2.2 (DERLIN-2.2) ; May be involved in the degradation of misfolded endoplasmic reticulum (ER) luminal proteins (244 aa)
       
  0.752
Bra020870
AT4G21810 (E=9e-127) DER2.1 | DER2.1 (DERLIN-2.1) ; May be involved in the degradation of misfolded endoplasmic reticulum (ER) luminal proteins (244 aa)
       
  0.752
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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