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Bra004926 protein (Brassica rapa) - STRING interaction network
"Bra004926" - AT2G45640 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra004926AT2G45640 (E=4e-059) SAP18, ATSAP18 | SAP18 (SIN3 ASSOCIATED POLYPEPTIDE P18); protein binding / transcription regulator (152 aa)    
Predicted Functional Partners:
Bra011842
AT4G39680 (E=7e-119) | SAP domain-containing protein (329 aa)
       
  0.990
Bra010668
AT4G39680 (E=9e-158) | SAP domain-containing protein (597 aa)
       
  0.990
Bra026158
AT1G15200 (E=9e-153) | protein-protein interaction regulator family protein (412 aa)
       
  0.905
Bra028145
AT5G37720 (E=2e-081) | RNA and export factor-binding protein, putative (260 aa)
     
 
    0.901
Bra020273
AT5G59950 (E=7e-067) | RNA and export factor-binding protein, putative (218 aa)
     
 
    0.901
Bra004158
AT1G66260 (E=1e-061) | RNA and export factor-binding protein, putative (288 aa)
     
 
    0.901
Bra002519
AT5G59950 (E=7e-074) | RNA and export factor-binding protein, putative (238 aa)
     
 
    0.901
Bra033418
AT3G52640 (E=0.0) | nicastrin-related (681 aa)
       
      0.891
Bra015971
AT1G73720 (E=2e-282) | transducin family protein / WD-40 repeat family protein (512 aa)
       
      0.891
Bra007752
AT2G26460 (E=4e-144) | RED family protein (572 aa)
       
      0.891
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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