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Bra004929 protein (Brassica rapa) - STRING interaction network
"Bra004929" - AT2G45680 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra004929AT2G45680 (E=6e-098) | TCP family transcription factor, putative (324 aa)    
Predicted Functional Partners:
Bra024875
AT2G01570 (E=6e-207) RGA1, RGA | RGA1 (REPRESSOR OF GA1-3 1); protein binding / transcription factor (573 aa)
       
      0.622
Bra015964
AT1G73805 (E=2e-155) | calmodulin binding (457 aa)
       
      0.621
Bra013289
AT4G18170 (E=1e-121) WRKY28, ATWRKY28 | WRKY28; transcription factor (308 aa)
       
      0.621
Bra012614
AT4G18170 (E=3e-138) WRKY28, ATWRKY28 | WRKY28; transcription factor (312 aa)
       
      0.621
Bra003828
AT1G73805 (E=5e-172) | calmodulin binding (425 aa)
       
      0.621
Bra031991
AT1G66350 (E=3e-153) RGL1, RGL | RGL1 (RGA-LIKE 1); transcription factor (505 aa)
       
      0.579
Bra030952
AT1G53230 (E=5e-045) TCP3 | TCP3; transcription factor (345 aa)
           
  0.483
Bra027284
AT3G15030 (E=2e-129) TCP4, MEE35 | TCP4 (TCP family transcription factor 4); transcription factor (406 aa)
           
  0.483
Bra001579
AT3G15030 (E=2e-141) TCP4, MEE35 | TCP4 (TCP family transcription factor 4); transcription factor (407 aa)
           
  0.483
Bra013973
AT5G17490 (E=7e-228) RGL3 | RGL3 (RGA-LIKE PROTEIN 3); transcription factor (525 aa)
       
      0.410
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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