STRINGSTRING
Bra004937 protein (Brassica rapa) - STRING interaction network
"Bra004937" - AT2G45770 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra004937AT2G45770 (E=3e-190) CPFTSY, FRD4 | CPFTSY; 7S RNA binding / GTP binding / nucleoside-triphosphatase/ nucleotide binding (368 aa)    
Predicted Functional Partners:
Bra009499
AT5G03940 (E=2e-269) FFC, 54CP, CPSRP54, SRP54CP | CPSRP54 (CHLOROPLAST SIGNAL RECOGNITION PARTICLE 54 KDA SUBUNIT); 7S RNA binding / GTP binding / mRNA binding / signal sequence binding (566 aa)
 
0.982
Bra014039
AT1G48900 (E=2e-055) | signal recognition particle 54 kDa protein 3 / SRP54 (SRP-54C) (411 aa)
 
0.971
Bra018760
AT1G48900 (E=1e-246) | signal recognition particle 54 kDa protein 3 / SRP54 (SRP-54C) (495 aa)
 
0.969
Bra014161
AT1G48900 (E=2e-239) | signal recognition particle 54 kDa protein 3 / SRP54 (SRP-54C) (496 aa)
 
0.969
Bra026145
AT1G48900 (E=3e-226) | signal recognition particle 54 kDa protein 3 / SRP54 (SRP-54C) (479 aa)
 
0.969
Bra028809
AT5G03940 (E=4e-249) FFC, 54CP, CPSRP54, SRP54CP | CPSRP54 (CHLOROPLAST SIGNAL RECOGNITION PARTICLE 54 KDA SUBUNIT); 7S RNA binding / GTP binding / mRNA binding / signal sequence binding (564 aa)
 
0.969
Bra034759
AT3G12370 (E=5e-084) | ribosomal protein L10 family protein (170 aa)
   
    0.951
Bra034055
AT3G11250 (E=1e-147) | 60S acidic ribosomal protein P0 (RPP0C) ; Ribosomal protein P0 is the functional equivalent of E.coli protein L10 (323 aa)
   
    0.951
Bra029752
AT3G11250 (E=3e-147) | 60S acidic ribosomal protein P0 (RPP0C) ; Ribosomal protein P0 is the functional equivalent of E.coli protein L10 (323 aa)
   
    0.951
Bra024770
AT1G25260 (E=3e-109) | acidic ribosomal protein P0-related (229 aa)
   
    0.951
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
Server load: low (13%) [HD]