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Bra004940 protein (Brassica rapa) - STRING interaction network
"Bra004940" - AT2G45820 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra004940AT2G45820 (E=6e-059) | DNA-binding protein, putative (192 aa)    
Predicted Functional Partners:
Bra033709
AT5G43980 (E=2e-115) PDLP1, PDLP1A | PDLP1 (PLASMODESMATA-LOCATED PROTEIN 1) (299 aa)
           
  0.489
Bra012467
AT5G05060 (E=3e-039) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- cellular_component unknown; EXPRESSED IN- male gametophyte, cultured cell, pollen tube; EXPRESSED DURING- L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s- Cystatin-related, plant (InterPro-IPR006525); BEST Arabidopsis thaliana protein match is- unknown protein (TAIR-AT5G05040.1); Has 40 Blast hits to 40 proteins in 1 species- Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 40; Viruses - 0; Other Eukaryotes - 0 (source- NCBI BLink). (143 aa)
           
  0.478
Bra013233
AT3G25070 (E=1e-079) RIN4 | RIN4 (RPM1 INTERACTING PROTEIN 4); protein binding (208 aa)
       
      0.448
Bra033342
AT1G02690 (E=3e-203) IMPA-6 | IMPA-6 (IMPORTIN ALPHA ISOFORM 6); binding / protein transporter (521 aa)
       
 
  0.416
Bra010228
AT4G31610 (E=2e-134) REM1, ATREM1 | REM1 (REPRODUCTIVE MERISTEM 1); DNA binding / transcription factor (499 aa)
           
  0.408
Bra035941
AT5G61130 (E=6e-053) PDCB1 | PDCB1 (PLASMODESMATA CALLOSE-BINDING PROTEIN 1); callose binding / polysaccharide binding (199 aa)
           
  0.406
Bra029334
AT5G61130 (E=1e-067) PDCB1 | PDCB1 (PLASMODESMATA CALLOSE-BINDING PROTEIN 1); callose binding / polysaccharide binding (195 aa)
           
  0.406
Bra018937
AT1G51940 (E=3e-286) | protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (634 aa)
           
  0.406
Bra014302
AT1G51940 (E=2e-287) | protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (610 aa)
           
  0.406
Bra012981
AT5G61130 (E=2e-069) PDCB1 | PDCB1 (PLASMODESMATA CALLOSE-BINDING PROTEIN 1); callose binding / polysaccharide binding (222 aa)
           
  0.406
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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