STRINGSTRING
Bra004941 protein (Brassica rapa) - STRING interaction network
"Bra004941" - AT4G17530 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra004941AT4G17530 (E=2e-015) RAB1C, ATRAB1C, ATRABD2C | ATRAB1C; GTP binding (277 aa)    
Predicted Functional Partners:
Bra028434
AT5G39500 (E=0.0) | pattern formation protein, putative (1675 aa)
     
  0.984
Bra027464
AT5G54750 (E=4e-102) | transport protein particle (TRAPP) component Bet3, putative (186 aa)
     
  0.970
Bra039807
AT3G53610 (E=2e-097) ATRAB8 | ATRAB8; GTP binding (215 aa)
     
 
  0.949
Bra038265
AT3G46060 (E=2e-090) ARA3 | ATRAB8A; GTP binding (376 aa)
     
 
  0.949
Bra033830
AT3G46060 (E=5e-055) ARA3 | ATRAB8A; GTP binding (193 aa)
     
 
  0.949
Bra029803
AT3G09900 (E=1e-091) ATRABE1E, ATRAB8E | ATRABE1E (ARABIDOPSIS RAB GTPASE HOMOLOG E1E); GTP binding (226 aa)
     
 
  0.949
Bra024106
AT3G46060 (E=4e-013) ARA3 | ATRAB8A; GTP binding (138 aa)
     
 
  0.949
Bra020282
AT3G46060 (E=7e-094) ARA3 | ATRAB8A; GTP binding (216 aa)
     
 
  0.949
Bra019475
AT3G46060 (E=1e-088) ARA3 | ATRAB8A; GTP binding (216 aa)
     
 
  0.949
Bra007015
AT1G06840 (E=8e-157) | leucine-rich repeat transmembrane protein kinase, putative (1007 aa)
     
 
  0.949
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
Server load: low (12%) [HD]