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Bra004944 protein (Brassica rapa) - STRING interaction network
"Bra004944" - AT2G45880 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra004944AT2G45880 (E=0.0) BMY4, BAM7 | BAM7 (BETA-AMYLASE 7); beta-amylase/ catalytic/ cation binding (672 aa)    
Predicted Functional Partners:
Bra004590
AT2G40840 (E=0.0) DPE2 | DPE2 (DISPROPORTIONATING ENZYME 2); 4-alpha-glucanotransferase/ heteroglycan binding (941 aa)
         
  0.935
Bra037799
AT5G64860 (E=3e-238) DPE1 | DPE1 (DISPROPORTIONATING ENZYME); 4-alpha-glucanotransferase/ catalytic/ cation binding (555 aa)
         
  0.904
Bra036881
AT4G25000 (E=2e-208) ATAMY1, AMY1 | AMY1 (ALPHA-AMYLASE-LIKE); alpha-amylase (388 aa)
         
  0.897
Bra015784
AT1G76130 (E=3e-244) ATAMY2, AMY2 | AMY2 (ALPHA-AMYLASE-LIKE 2); alpha-amylase/ calcium ion binding / catalytic/ cation binding (413 aa)
         
  0.897
Bra016262
AT1G69830 (E=0.0) ATAMY3, AMY3 | AMY3 (ALPHA-AMYLASE-LIKE 3); alpha-amylase (896 aa)
         
  0.564
Bra026415
AT4G26630 (E=3e-130) | EXPRESSED IN- 23 plant structures; EXPRESSED DURING- 13 growth stages; CONTAINS InterPro DOMAIN/s- DEK, C-terminal (InterPro-IPR014876); BEST Arabidopsis thaliana protein match is- unknown protein (TAIR-AT5G55660.1); Has 253164 Blast hits to 95130 proteins in 2571 species- Archae - 852; Bacteria - 27744; Metazoa - 108483; Fungi - 29060; Plants - 10256; Viruses - 1718; Other Eukaryotes - 75051 (source- NCBI BLink). (835 aa)
           
  0.406
Bra024007
AT4G31450 (E=3e-169) | zinc finger (C3HC4-type RING finger) family protein (467 aa)
           
  0.406
Bra014847
AT3G54030 (E=2e-270) | protein kinase family protein (490 aa)
           
  0.406
Bra006501
AT5G19340 (E=9e-043) | unknown protein (246 aa)
           
  0.406
Bra002229
AT5G19340 (E=4e-054) | unknown protein (257 aa)
           
  0.406
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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