STRINGSTRING
Bra004946 protein (Brassica rapa) - STRING interaction network
"Bra004946" - AT2G45900 in Brassica rapa
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra004946AT2G45900 (E=4e-132) | unknown protein (674 aa)    
Predicted Functional Partners:
Bra039412
AT3G58650 (E=2e-162) | unknown protein (959 aa)
           
  0.406
Bra038036
AT5G01230 (E=7e-176) | FtsJ-like methyltransferase family protein ; Methylates the 2’-O-ribose of nucleotides at positions 32 and 34 of the tRNA anticodon loop of substrate tRNAs (309 aa)
           
  0.406
Bra024923
AT5G47680 (E=4e-122) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- cellular_component unknown; EXPRESSED IN- 23 plant structures; EXPRESSED DURING- 13 growth stages; CONTAINS InterPro DOMAIN/s- tRNA (guanine-N1-)-methyltransferase (InterPro-IPR016009), tRNA (guanine-N(1)-)-methyltransferase, metazoa (InterPro-IPR016653), tRNA (guanine-N1-)-methyltransferase, eukaryotic (InterPro-IPR007356); Has 9601 Blast hits to 4663 proteins in 357 species- Archae - 22; Bacteria - 498; Metazoa - 3588; Fungi - 1024; Plants - 270; Viruses - 29; Other E [...] (348 aa)
           
  0.406
Bra021469
AT3G02320 (E=6e-295) | RNA binding / tRNA (guanine-N2-)-methyltransferase (573 aa)
           
  0.406
Bra017470
AT5G47680 (E=5e-120) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- cellular_component unknown; EXPRESSED IN- 23 plant structures; EXPRESSED DURING- 13 growth stages; CONTAINS InterPro DOMAIN/s- tRNA (guanine-N1-)-methyltransferase (InterPro-IPR016009), tRNA (guanine-N(1)-)-methyltransferase, metazoa (InterPro-IPR016653), tRNA (guanine-N1-)-methyltransferase, eukaryotic (InterPro-IPR007356); Has 9601 Blast hits to 4663 proteins in 357 species- Archae - 22; Bacteria - 498; Metazoa - 3588; Fungi - 1024; Plants - 270; Viruses - 29; Other E [...] (344 aa)
           
  0.406
Bra008750
AT5G14600 (E=4e-159) | tRNA (adenine-N1-)-methyltransferase (320 aa)
           
  0.406
Bra008136
AT1G74160 (E=0.0) | unknown protein (1004 aa)
           
  0.406
Bra007217
AT3G56120 (E=4e-094) | Met-10+ like family protein ; Specifically methylates the N1 position of guanosine-37 in various cytoplasmic and mitochondrial tRNAs. Methylation is not dependent on the nature of the nucleoside 5’ of the target nucleoside. This is the first step in the biosynthesis of wybutosine (yW), a modified base adjacent to the anticodon of tRNAs and required for accurate decoding (431 aa)
           
  0.406
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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