STRINGSTRING
Bra004954 protein (Brassica rapa) - STRING interaction network
"Bra004954" - AT2G45990 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra004954AT2G45990 (E=2e-136) | unknown protein (269 aa)    
Predicted Functional Partners:
Bra038418
AT1G31330 (E=6e-090) PSAF | PSAF (photosystem I subunit F) (213 aa)
   
          0.488
Bra014908
AT1G31330 (E=3e-103) PSAF | PSAF (photosystem I subunit F) (217 aa)
   
          0.487
Bra023176
AT1G31330 (E=2e-100) PSAF | PSAF (photosystem I subunit F) (220 aa)
   
          0.483
Bra001281
AT3G08010 (E=8e-183) ATAB2 | ATAB2; RNA binding (375 aa)
   
          0.482
Bra031147
AT2G20890 (E=3e-116) PSB29, THF1 | PSB29 (296 aa)
   
          0.477
Bra013018
AT5G23120 (E=9e-198) HCF136 | HCF136; protein binding (404 aa)
   
          0.472
Bra025180
AT3G26070 (E=6e-119) | plastid-lipid associated protein PAP / fibrillin family protein (243 aa)
   
        0.466
Bra019190
AT4G25080 (E=3e-027) CHLM | CHLM (magnesium-protoporphyrin IX methyltransferase); magnesium protoporphyrin IX methyltransferase (93 aa)
   
          0.463
Bra035516
AT1G32060 (E=1e-099) PRK | PRK (PHOSPHORIBULOKINASE); ATP binding / phosphoribulokinase/ protein binding (191 aa)
   
          0.457
Bra015132
AT2G04039 (E=6e-070) | unknown protein (197 aa)
   
          0.456
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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