STRINGSTRING
Bra004956 protein (Brassica rapa) - STRING interaction network
"Bra004956" - AT2G46040 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra004956AT2G46040 (E=1e-122) | ARID/BRIGHT DNA-binding domain-containing protein / ELM2 domain-containing protein (514 aa)    
Predicted Functional Partners:
Bra031628
AT1G08460 (E=5e-185) HDA08, HDA8, ATHDA8 | HDA08; histone deacetylase (386 aa)
       
 
  0.813
Bra002058
AT2G17410 (E=5e-255) | ARID/BRIGHT DNA-binding domain-containing protein (854 aa)
           
  0.512
Bra029111
AT5G52660 (E=5e-113) | myb family transcription factor (320 aa)
           
  0.483
Bra007536
AT3G60460 (E=2e-082) DUO1 | DUO1 (DUO POLLEN 1); DNA binding / transcription factor (269 aa)
           
  0.483
Bra003413
AT3G60460 (E=9e-119) DUO1 | DUO1 (DUO POLLEN 1); DNA binding / transcription factor (291 aa)
           
  0.483
Bra034074
AT3G09600 (E=6e-050) | myb family transcription factor (263 aa)
           
  0.432
Bra033257
AT1G01520 (E=8e-114) | myb family transcription factor (270 aa)
           
  0.432
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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