STRINGSTRING
Bra004960 protein (Brassica rapa) - STRING interaction network
"Bra004960" - AT2G46080 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra004960AT2G46080 (E=1e-144) | INVOLVED IN- biological_process unknown; EXPRESSED IN- 23 plant structures; EXPRESSED DURING- 13 growth stages; BEST Arabidopsis thaliana protein match is- BPS1 (BYPASS 1) (TAIR-AT1G01550.2); Has 94 Blast hits to 83 proteins in 14 species- Archae - 0; Bacteria - 2; Metazoa - 1; Fungi - 0; Plants - 91; Viruses - 0; Other Eukaryotes - 0 (source- NCBI BLink). (349 aa)    
Predicted Functional Partners:
Bra030872
AT1G55270 (E=2e-244) | kelch repeat-containing F-box family protein (435 aa)
           
  0.467
Bra024446
AT5G67480 (E=3e-174) BT4 | BT4 (BTB AND TAZ DOMAIN PROTEIN 4); protein binding / transcription regulator (380 aa)
           
  0.467
Bra011908
AT1G55270 (E=4e-244) | kelch repeat-containing F-box family protein (435 aa)
           
  0.467
Bra010386
AT4G28020 (E=2e-157) | unknown protein (328 aa)
           
  0.467
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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