STRINGSTRING
Bra004961 protein (Brassica rapa) - STRING interaction network
"Bra004961" - AT2G46090 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra004961AT2G46090 (E=6e-125) | diacylglycerol kinase family protein (392 aa)    
Predicted Functional Partners:
Bra005063
AT2G39090 (E=1e-259) | tetratricopeptide repeat (TPR)-containing protein (558 aa)
       
  0.917
Bra033769
AT3G48150 (E=1e-293) APC8, CDC23 | APC8 (ANAPHASE-PROMOTING COMPLEX SUBUNIT 8); binding (578 aa)
     
  0.916
Bra018081
AT3G48150 (E=0.0) APC8, CDC23 | APC8 (ANAPHASE-PROMOTING COMPLEX SUBUNIT 8); binding (579 aa)
     
  0.916
Bra024475
AT2G18290 (E=1e-102) APC10 | anaphase-promoting complex, subunit 10 family / APC10 family ; Component of the anaphase promoting complex/cyclosome (APC/C), a cell cycle-regulated E3 ubiquitin-protein ligase complex that controls progression through mitosis and the G1 phase of the cell cycle (192 aa)
       
  0.915
Bra028905
AT2G04660 (E=0.0) APC2 | APC2; ubiquitin protein ligase binding / ubiquitin-protein ligase (856 aa)
       
    0.909
Bra025616
AT2G04660 (E=1e-300) APC2 | APC2; ubiquitin protein ligase binding / ubiquitin-protein ligase (833 aa)
       
    0.909
Bra040769
AT1G32310 (E=8e-031) | unknown protein (99 aa)
       
 
  0.903
Bra003339
AT3G58490 (E=1e-214) | phosphatidic acid phosphatase family protein / PAP2 family protein (411 aa)
     
  0.857
Bra026621
AT2G02010 (E=2e-271) GAD4 | GAD4 (glutamate decarboxylase 4); calmodulin binding (493 aa)
       
  0.763
Bra023612
AT5G17330 (E=1e-241) GAD, GAD1 | GAD; calmodulin binding / glutamate decarboxylase (472 aa)
       
  0.763
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
Server load: low (7%) [HD]