STRINGSTRING
Bra004962 protein (Brassica rapa) - STRING interaction network
"Bra004962" - AT2G46100 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra004962AT2G46100 (E=1e-106) | unknown protein (248 aa)    
Predicted Functional Partners:
Bra017347
AT3G25805 (E=2e-145) | unknown protein (333 aa)
   
     
  0.627
Bra015132
AT2G04039 (E=6e-070) | unknown protein (197 aa)
   
        0.532
Bra013018
AT5G23120 (E=9e-198) HCF136 | HCF136; protein binding (404 aa)
   
          0.519
Bra035689
AT2G28605 (E=1e-090) | Encodes a PsbP domain-OEC23 like protein localized in thylakoid (peripheral-lumenal side). (235 aa)
   
          0.501
Bra000485
AT2G28605 (E=2e-085) | Encodes a PsbP domain-OEC23 like protein localized in thylakoid (peripheral-lumenal side). (240 aa)
   
          0.499
Bra011007
AT1G26090 (E=9e-189) | unknown protein (449 aa)
   
          0.486
Bra011434
AT4G33350 (E=3e-124) | chloroplast inner membrane import protein Tic22, putative (266 aa)
   
          0.473
Bra018531
AT4G02725 (E=1e-034) | unknown protein (97 aa)
   
          0.445
Bra037042
AT4G32770 (E=1e-260) VTE1, ATSDX1 | VTE1 (VITAMIN E DEFICIENT 1); tocopherol cyclase (490 aa)
   
          0.419
Bra020067
AT5G19855 (E=2e-090) | unknown protein (258 aa)
   
        0.416
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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