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Bra004963 protein (Brassica rapa) - STRING interaction network
"Bra004963" - AT2G40410 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra004963AT2G40410 (E=6e-157) | Ca(2+)-dependent nuclease, putative (333 aa)    
Predicted Functional Partners:
Bra029067
AT5G53460 (E=0.0) GLT1 | GLT1; glutamate synthase (NADH) (2199 aa)
         
  0.560
Bra016948
AT2G41220 (E=0.0) GLU2 | GLU2 (GLUTAMATE SYNTHASE 2); glutamate synthase (ferredoxin) (1626 aa)
         
  0.554
Bra009483
AT5G04140 (E=0.0) GLU1, GLS1, GLUS, FD-GOGAT | GLU1 (GLUTAMATE SYNTHASE 1); glutamate synthase (ferredoxin) (1620 aa)
         
  0.554
Bra000220
AT2G41220 (E=0.0) GLU2 | GLU2 (GLUTAMATE SYNTHASE 2); glutamate synthase (ferredoxin) (1586 aa)
         
  0.554
Bra009927
AT5G26940 (E=2e-143) | exonuclease family protein (319 aa)
           
  0.476
Bra015850
AT1G75350 (E=3e-061) emb2184 | emb2184 (embryo defective 2184); structural constituent of ribosome (147 aa)
              0.437
Bra004683
AT1G75350 (E=6e-057) emb2184 | emb2184 (embryo defective 2184); structural constituent of ribosome (142 aa)
              0.437
Bra034125
AT3G10540 (E=2e-256) | 3-phosphoinositide-dependent protein kinase, putative (489 aa)
       
      0.435
Bra029850
AT3G10540 (E=4e-251) | 3-phosphoinositide-dependent protein kinase, putative (481 aa)
       
      0.435
Bra009447
AT5G04510 (E=1e-247) PDK1, ATPDK1 | PDK1 (3’-PHOSPHOINOSITIDE-DEPENDENT PROTEIN KINASE 1); 3-phosphoinositide-dependent protein kinase/ kinase/ phosphoinositide binding / protein binding / protein kinase (490 aa)
       
      0.435
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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