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Bra004965 protein (Brassica rapa) - STRING interaction network
"Bra004965" - AT2G40380 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra004965AT2G40380 (E=3e-069) PRA1.B2 | PRA1.B2 (PRENYLATED RAB ACCEPTOR 1.B2) (213 aa)    
Predicted Functional Partners:
Bra001418
AT3G11730 (E=3e-106) ATFP8, ATRABD1, RABD1 | ATFP8; GTP binding / GTP-dependent protein binding / myosin XI tail binding (206 aa)
       
 
  0.939
Bra025091
AT5G45130 (E=2e-104) ATRAB5A, ATRABF2A, RABF2A, RAB5A, RHA1, ATRAB-F2A, RAB-F2A | RHA1 (RAB HOMOLOG 1); GTP binding (200 aa)
       
 
  0.908
Bra000056
AT2G38360 (E=1e-089) PRA1.B4 | PRA1.B4 (PRENYLATED RAB ACCEPTOR 1.B4) (222 aa)
     
   
0.907
Bra006975
AT3G53180 (E=0.0) | catalytic/ glutamate-ammonia ligase (847 aa)
       
      0.907
Bra005924
AT5G07110 (E=1e-068) PRA1.B6 | PRA1.B6 (PRENYLATED RAB ACCEPTOR 1.B6) (218 aa)
       
 
0.906
Bra002626
AT2G40116 (E=1e-167) | phosphoinositide-specific phospholipase C family protein (580 aa)
       
      0.904
Bra002620
AT5G58750 (E=1e-201) | wound-responsive protein-related (386 aa)
       
      0.904
Bra038676
AT3G11730 (E=7e-109) ATFP8, ATRABD1, RABD1 | ATFP8; GTP binding / GTP-dependent protein binding / myosin XI tail binding (206 aa)
       
 
  0.879
Bra028548
AT3G53180 (E=0.0) | catalytic/ glutamate-ammonia ligase (817 aa)
       
      0.876
Bra024956
AT5G47200 (E=1e-111) ATRABD2B, ATRAB1A | ATRAB1A; GTP binding (202 aa)
     
 
  0.694
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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