STRINGSTRING
Bra004967 protein (Brassica rapa) - STRING interaction network
"Bra004967" - AT2G40330 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra004967AT2G40330 (E=7e-085) | Bet v I allergen family protein (212 aa)    
Predicted Functional Partners:
Bra016034
AT1G72770 (E=6e-204) HAB1 | HAB1 (HOMOLOGY TO ABI1); catalytic/ protein serine/threonine phosphatase (484 aa)
       
  0.999
Bra002766
AT5G57050 (E=5e-187) ABI2 | ABI2 (ABA INSENSITIVE 2); protein serine/threonine phosphatase (422 aa)
       
  0.998
Bra013334
AT4G18620 (E=6e-066) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- cellular_component unknown; BEST Arabidopsis thaliana protein match is- Bet v I allergen family protein (TAIR-AT5G45870.1); Has 190 Blast hits to 190 proteins in 20 species- Archae - 0; Bacteria - 0; Metazoa - 12; Fungi - 0; Plants - 178; Viruses - 0; Other Eukaryotes - 0 (source- NCBI BLink). (166 aa)
       
 
0.998
Bra034845
AT3G11410 (E=8e-152) ATPP2CA, AHG3, PP2CA | PP2CA (ARABIDOPSIS THALIANA PROTEIN PHOSPHATASE 2CA); protein binding / protein serine/threonine phosphatase (399 aa)
       
  0.990
Bra013945
AT4G26080 (E=2e-182) ABI1 | ABI1 (ABA INSENSITIVE 1); calcium ion binding / protein serine/threonine phosphatase (425 aa)
       
  0.990
Bra010441
AT4G26080 (E=4e-191) ABI1 | ABI1 (ABA INSENSITIVE 1); calcium ion binding / protein serine/threonine phosphatase (422 aa)
       
  0.990
Bra002038
AT3G11410 (E=9e-152) ATPP2CA, AHG3, PP2CA | PP2CA (ARABIDOPSIS THALIANA PROTEIN PHOSPHATASE 2CA); protein binding / protein serine/threonine phosphatase (380 aa)
       
  0.990
Bra031574
AT1G07430 (E=1e-184) | protein phosphatase 2C, putative / PP2C, putative (436 aa)
       
  0.959
Bra025964
AT1G17550 (E=2e-234) HAB2 | HAB2; catalytic/ protein serine/threonine phosphatase (508 aa)
       
  0.944
Bra018398
AT2G29380 (E=4e-144) | protein phosphatase 2C, putative / PP2C, putative (366 aa)
       
  0.941
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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