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Bra004970 protein (Brassica rapa) - STRING interaction network
"Bra004970" - AT2G40290 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra004970AT2G40290 (E=3e-155) | eukaryotic translation initiation factor 2 subunit 1, putative / eIF-2A, putative / eIF-2-alpha, putative (342 aa)    
Predicted Functional Partners:
Bra029578
AT5G20920 (E=4e-098) EIF2 BETA | EIF2 BETA; translation initiation factor (264 aa)
     
  0.989
Bra020136
AT5G20920 (E=1e-106) EIF2 BETA | EIF2 BETA; translation initiation factor (272 aa)
     
  0.989
Bra005662
AT5G01930 (E=8e-237) | (1-4)-beta-mannan endohydrolase, putative (634 aa)
     
  0.989
Bra002341
AT5G20920 (E=1e-111) EIF2 BETA | EIF2 BETA; translation initiation factor (271 aa)
     
  0.989
Bra032525
AT1G04170 (E=3e-262) EIF2 GAMMA | EIF2 GAMMA; translation factor, nucleic acid binding / translation initiation factor (465 aa)
     
  0.982
Bra030556
AT1G04170 (E=3e-146) EIF2 GAMMA | EIF2 GAMMA; translation factor, nucleic acid binding / translation initiation factor (478 aa)
     
  0.982
Bra015292
AT1G04170 (E=2e-259) EIF2 GAMMA | EIF2 GAMMA; translation factor, nucleic acid binding / translation initiation factor (465 aa)
     
  0.982
Bra039579
AT1G36730 (E=4e-177) | eukaryotic translation initiation factor 5, putative / eIF-5, putative (447 aa)
     
  0.982
Bra025391
AT1G77840 (E=1e-089) | eukaryotic translation initiation factor 5, putative / eIF-5, putative (411 aa)
     
  0.982
Bra015653
AT1G77840 (E=2e-107) | eukaryotic translation initiation factor 5, putative / eIF-5, putative (406 aa)
     
  0.982
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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