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Bra004978 protein (Brassica rapa) - STRING interaction network
"Bra004978" - AT2G40220 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra004978AT2G40220 (E=4e-078) ABI4, SUN6, SIS5, ISI3, GIN6, SAN5 | ABI4 (ABA INSENSITIVE 4); DNA binding / transcription factor (317 aa)    
Predicted Functional Partners:
Bra013248
AT3G24650 (E=7e-290) ABI3, SIS10 | ABI3 (ABA INSENSITIVE 3); DNA binding / basal transcription repressor/ transcription activator/ transcription factor (717 aa)
     
 
  0.764
Bra005287
AT2G36270 (E=5e-133) ABI5, GIA1 | ABI5 (ABA INSENSITIVE 5); DNA binding / transcription activator/ transcription factor (438 aa)
           
  0.633
Bra011230
AT4G30890 (E=5e-204) UBP24 | UBP24 (UBIQUITIN-SPECIFIC PROTEASE 24); ubiquitin thiolesterase/ ubiquitin-specific protease (590 aa)
       
      0.618
Bra010268
AT4G30890 (E=3e-214) UBP24 | UBP24 (UBIQUITIN-SPECIFIC PROTEASE 24); ubiquitin thiolesterase/ ubiquitin-specific protease (569 aa)
       
      0.618
Bra024037
AT4G30890 (E=5e-172) UBP24 | UBP24 (UBIQUITIN-SPECIFIC PROTEASE 24); ubiquitin thiolesterase/ ubiquitin-specific protease (400 aa)
       
      0.614
Bra017251
AT2G36270 (E=3e-070) ABI5, GIA1 | ABI5 (ABA INSENSITIVE 5); DNA binding / transcription activator/ transcription factor (396 aa)
           
  0.587
Bra018964
AT1G52340 (E=7e-129) ABA2, SIS4, GIN1, SDR1, ISI4, SRE1, ATABA2, ATSDR1 | ABA2 (ABA DEFICIENT 2); alcohol dehydrogenase/ oxidoreductase/ xanthoxin dehydrogenase (284 aa)
           
  0.581
Bra013945
AT4G26080 (E=2e-182) ABI1 | ABI1 (ABA INSENSITIVE 1); calcium ion binding / protein serine/threonine phosphatase (425 aa)
           
  0.562
Bra010441
AT4G26080 (E=4e-191) ABI1 | ABI1 (ABA INSENSITIVE 1); calcium ion binding / protein serine/threonine phosphatase (422 aa)
           
  0.562
Bra002766
AT5G57050 (E=5e-187) ABI2 | ABI2 (ABA INSENSITIVE 2); protein serine/threonine phosphatase (422 aa)
           
  0.544
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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