STRINGSTRING
Bra004981 protein (Brassica rapa) - STRING interaction network
"Bra004981" - AT2G40170 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra004981AT2G40170 (E=4e-034) ATEM6, GEA6 | GEA6 (LATE EMBRYOGENESIS ABUNDANT 6) (84 aa)    
Predicted Functional Partners:
Bra013248
AT3G24650 (E=7e-290) ABI3, SIS10 | ABI3 (ABA INSENSITIVE 3); DNA binding / basal transcription repressor/ transcription activator/ transcription factor (717 aa)
           
  0.505
Bra005287
AT2G36270 (E=5e-133) ABI5, GIA1 | ABI5 (ABA INSENSITIVE 5); DNA binding / transcription activator/ transcription factor (438 aa)
     
   
  0.504
Bra017251
AT2G36270 (E=3e-070) ABI5, GIA1 | ABI5 (ABA INSENSITIVE 5); DNA binding / transcription activator/ transcription factor (396 aa)
     
   
  0.487
Bra040260
AT1G45249 (E=5e-081) ABF2, AREB1 | ABF2 (ABSCISIC ACID RESPONSIVE ELEMENTS-BINDING FACTOR 2); DNA binding / protein binding / transcription activator/ transcription factor (364 aa)
           
  0.483
Bra037533
AT3G19290 (E=3e-066) ABF4, AREB2 | ABF4 (ABRE BINDING FACTOR 4); DNA binding / protein binding / transcription activator/ transcription factor (388 aa)
           
  0.483
Bra011485
AT4G34000 (E=1e-063) ABF3, DPBF5 | ABF3 (ABSCISIC ACID RESPONSIVE ELEMENTS-BINDING FACTOR 3); DNA binding / protein binding / transcription activator/ transcription factor (439 aa)
           
  0.483
Bra001742
AT1G49720 (E=2e-100) ABF1 | ABF1 (ABSCISIC ACID RESPONSIVE ELEMENT-BINDING FACTOR 1); DNA binding / protein binding / transcription activator/ transcription factor (355 aa)
           
  0.483
Bra009225
AT5G06760 (E=3e-038) | late embryogenesis abundant group 1 domain-containing protein / LEA group 1 domain-containing protein (159 aa)
     
   
  0.419
Bra005911
AT5G06760 (E=8e-039) | late embryogenesis abundant group 1 domain-containing protein / LEA group 1 domain-containing protein (159 aa)
     
   
  0.419
Bra023813
AT3G22640 (E=5e-171) PAP85 | PAP85; nutrient reservoir (486 aa)
           
  0.406
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
Server load: low (10%) [HD]