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Bra004989 protein (Brassica rapa) - STRING interaction network
"Bra004989" - AT2G40100 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra004989AT2G40100 (E=1e-133) LHCB4.3 | LHCB4.3 (light harvesting complex PSII); chlorophyll binding (276 aa)    
Predicted Functional Partners:
Bra031534
AT1G06680 (E=1e-120) PSBP-1, OEE2, PSII-P, OE23 | PSBP-1 (PHOTOSYSTEM II SUBUNIT P-1); poly(U) binding (263 aa)
     
      0.752
Bra030660
AT1G06680 (E=3e-113) PSBP-1, OEE2, PSII-P, OE23 | PSBP-1 (PHOTOSYSTEM II SUBUNIT P-1); poly(U) binding (261 aa)
     
      0.752
Bra018294
AT1G06680 (E=5e-122) PSBP-1, OEE2, PSII-P, OE23 | PSBP-1 (PHOTOSYSTEM II SUBUNIT P-1); poly(U) binding (263 aa)
     
      0.752
Bra015520
AT1G06680 (E=2e-119) PSBP-1, OEE2, PSII-P, OE23 | PSBP-1 (PHOTOSYSTEM II SUBUNIT P-1); poly(U) binding (263 aa)
     
      0.752
Bra031624
AT1G08380 (E=4e-072) PSAO | PSAO (photosystem I subunit O) (145 aa)
     
        0.733
Bra018629
AT1G08380 (E=7e-067) PSAO | PSAO (photosystem I subunit O) (145 aa)
     
        0.733
Bra038418
AT1G31330 (E=6e-090) PSAF | PSAF (photosystem I subunit F) (213 aa)
     
   
  0.726
Bra023176
AT1G31330 (E=2e-100) PSAF | PSAF (photosystem I subunit F) (220 aa)
     
   
  0.726
Bra014908
AT1G31330 (E=3e-103) PSAF | PSAF (photosystem I subunit F) (217 aa)
     
   
  0.726
Bra000708
AT4G10340 (E=1e-133) LHCB5 | LHCB5 (LIGHT HARVESTING COMPLEX OF PHOTOSYSTEM II 5); chlorophyll binding (280 aa)
     
 
0.707
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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