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Bra004990 protein (Brassica rapa) - STRING interaction network
"Bra004990" - AT2G40090 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra004990AT2G40090 (E=6e-277) ATATH9 | ATATH9; transporter (646 aa)    
Predicted Functional Partners:
Bra008488
AT1G80190 (E=1e-094) PSF1 | PSF1 (PARTNER OF SLD FIVE 1) (198 aa)
     
  0.994
Bra001455
AT3G12530 (E=3e-106) PSF2 | PSF2 (210 aa)
     
  0.992
Bra037442
AT5G49010 (E=9e-099) SLD5 | SLD5 (SYNTHETIC LETHALITY WITH DPB11-1 5) ; The GINS complex plays an essential role in the initiation of DNA replication (219 aa)
     
  0.989
Bra015098
AT3G25100 (E=1e-292) CDC45 | CDC45 (cell division cycle 45) (581 aa)
     
  0.972
Bra013232
AT3G25100 (E=3e-297) CDC45 | CDC45 (cell division cycle 45) (593 aa)
     
  0.972
Bra013068
AT2G16440 (E=0.0) MCM4 | DNA replication licensing factor, putative (825 aa)
     
  0.968
Bra013169
AT2G07690 (E=0.0) MCM5 | minichromosome maintenance family protein / MCM family protein (727 aa)
     
  0.966
Bra036296
AT4G02060 (E=0.0) PRL, MCM7 | PRL (PROLIFERA); ATP binding / DNA binding / DNA-dependent ATPase/ nucleoside-triphosphatase/ nucleotide binding (711 aa)
     
  0.965
Bra000897
AT4G02060 (E=0.0) PRL, MCM7 | PRL (PROLIFERA); ATP binding / DNA binding / DNA-dependent ATPase/ nucleoside-triphosphatase/ nucleotide binding (718 aa)
     
  0.965
Bra025026
AT5G46280 (E=0.0) MCM3 | DNA replication licensing factor, putative (771 aa)
     
  0.964
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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