STRINGSTRING
Bra004991 protein (Brassica rapa) - STRING interaction network
"Bra004991" - AT2G40080 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra004991AT2G40080 (E=9e-046) ELF4 | ELF4 (EARLY FLOWERING 4) (113 aa)    
Predicted Functional Partners:
Bra034284
AT2G25930 (E=3e-105) ELF3, PYK20 | ELF3 (EARLY FLOWERING 3); protein C-terminus binding / transcription factor (602 aa)
     
 
  0.861
Bra031274
AT3G21320 (E=1e-210) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- cellular_component unknown; BEST Arabidopsis thaliana protein match is- ELF3 (EARLY FLOWERING 3); protein C-terminus binding / transcription factor (TAIR-AT2G25930.1); Has 39 Blast hits to 37 proteins in 14 species- Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 0; Plants - 34; Viruses - 0; Other Eukaryotes - 2 (source- NCBI BLink). (536 aa)
     
 
  0.800
Bra007774
AT2G25930 (E=2e-085) ELF3, PYK20 | ELF3 (EARLY FLOWERING 3); protein C-terminus binding / transcription factor (592 aa)
     
 
  0.800
Bra018204
AT3G46640 (E=2e-115) PCL1, LUX | PCL1 (PHYTOCLOCK 1); DNA binding / transcription factor (304 aa)
     
 
  0.788
Bra035933
AT5G61380 (E=2e-098) TOC1, APRR1, PRR1 | TOC1 (TIMING OF CAB EXPRESSION 1); transcription regulator/ two-component response regulator (509 aa)
     
 
  0.726
Bra039947
AT3G22380 (E=0.0) TIC | TIC (TIME FOR COFFEE) (1561 aa)
       
 
  0.689
Bra009768
AT5G24470 (E=5e-213) APRR5, PRR5 | APRR5 (ARABIDOPSIS PSEUDO-RESPONSE REGULATOR 5); transcription regulator/ two-component response regulator (563 aa)
     
 
  0.639
Bra020013
AT1G09570 (E=0.0) PHYA, FHY2, FRE1, HY8 | PHYA (PHYTOCHROME A); G-protein coupled photoreceptor/ protein histidine kinase/ red or far-red light photoreceptor/ signal transducer (1210 aa)
       
 
  0.637
Bra004503
AT2G46830 (E=2e-117) CCA1 | CCA1 (CIRCADIAN CLOCK ASSOCIATED 1); DNA binding / transcription activator/ transcription factor/ transcription repressor (552 aa)
           
  0.630
Bra009565
AT5G02810 (E=9e-279) PRR7, APRR7 | PRR7 (PSEUDO-RESPONSE REGULATOR 7); transcription regulator/ two-component response regulator (704 aa)
       
 
  0.629
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
Server load: low (9%) [HD]