STRINGSTRING
Bra004992 protein (Brassica rapa) - STRING interaction network
"Bra004992" - AT2G40070 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra004992AT2G40070 (E=1e-122) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- cellular_component unknown; EXPRESSED IN- 17 plant structures; EXPRESSED DURING- 7 growth stages; BEST Arabidopsis thaliana protein match is- proline-rich family protein (TAIR-AT3G09000.1); Has 94255 Blast hits to 49644 proteins in 1573 species- Archae - 225; Bacteria - 11215; Metazoa - 37735; Fungi - 21320; Plants - 3339; Viruses - 2662; Other Eukaryotes - 17759 (source- NCBI BLink). (589 aa)    
Predicted Functional Partners:
Bra006990
AT3G53320 (E=7e-165) | unknown protein (541 aa)
     
   
  0.489
Bra017208
AT2G37070 (E=7e-080) | unknown protein (456 aa)
           
  0.483
Bra016865
AT2G42610 (E=1e-087) LSH10 | LSH10 (LIGHT SENSITIVE HYPOCOTYLS 10) (176 aa)
           
  0.400
Bra000269
AT2G42610 (E=8e-091) LSH10 | LSH10 (LIGHT SENSITIVE HYPOCOTYLS 10) (177 aa)
           
  0.400
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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