STRINGSTRING
Bra004996 protein (Brassica rapa) - STRING interaction network
"Bra004996" - AT2G39980 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra004996AT2G39980 (E=6e-221) | transferase family protein (479 aa)    
Predicted Functional Partners:
Bra014046
AT1G45230 (E=4e-087) | defective chloroplasts and leaves protein-related / DCL protein-related (210 aa)
           
  0.412
Bra034361
AT1G21990 (E=2e-125) | F-box family protein (355 aa)
           
  0.406
Bra014043
AT1G45180 (E=9e-120) | zinc finger (C3HC4-type RING finger) family protein (576 aa)
           
  0.406
Bra005549
AT2G32890 (E=3e-012) RALFL17 | RALFL17 (RALF-LIKE 17); signal transducer (76 aa)
           
  0.406
Bra004969
AT2G40316 (E=8e-086) | unknown protein (297 aa)
           
  0.406
Bra004623
AT2G41475 (E=7e-082) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- endomembrane system; CONTAINS InterPro DOMAIN/s- Lipase/lipooxygenase, PLAT/LH2 (InterPro-IPR008976), Embryo-specific 3 (InterPro-IPR010417); BEST Arabidopsis thaliana protein match is- embryo-specific protein-related (TAIR-AT5G62200.1); Has 60 Blast hits to 60 proteins in 11 species- Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 60; Viruses - 0; Other Eukaryotes - 0 (source- NCBI BLink). (177 aa)
           
  0.406
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
Server load: low (8%) [HD]