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Bra004997 protein (Brassica rapa) - STRING interaction network
"Bra004997" - AT2G39970 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra004997AT2G39970 (E=2e-140) | peroxisomal membrane protein (PMP36) (338 aa)    
Predicted Functional Partners:
Bra013969
AT5G17550 (E=4e-104) PEX19-2, PEROXIN 19-2 | PEX19-2 (247 aa)
     
 
  0.731
Bra001079
AT3G03490 (E=8e-100) PEX19-1 | PEX19-1 (peroxin 19-1) (244 aa)
     
 
  0.731
Bra010652
AT4G39850 (E=0.0) PXA1, PED3, CTS | PXA1 (PEROXISOMAL ABC TRANSPORTER 1); ATPase, coupled to transmembrane movement of substances (1433 aa)
     
 
  0.597
Bra001177
AT3G05970 (E=0.0) LACS6, ATLACS6 | LACS6 (long-chain acyl-CoA synthetase 6); long-chain-fatty-acid-CoA ligase (696 aa)
     
   
  0.502
Bra039320
AT2G45740 (E=1e-125) PEX11D | PEX11D (237 aa)
     
 
  0.479
Bra032652
AT1G01860 (E=6e-151) PFC1 | PFC1 (PALEFACE 1); mRNA (2’-O-methyladenosine-N6-)-methyltransferase (588 aa)
     
 
  0.479
Bra032228
AT1G47750 (E=2e-064) PEX11A | PEX11A (PEROXIN 11A) (226 aa)
     
 
  0.479
Bra018149
AT3G47430 (E=4e-118) PEX11B | PEX11B (226 aa)
     
 
  0.479
Bra014455
AT3G61070 (E=2e-088) PEX11E | PEX11E (236 aa)
     
 
  0.479
Bra014092
AT1G47750 (E=1e-098) PEX11A | PEX11A (PEROXIN 11A) (247 aa)
     
 
  0.479
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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