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Bra004998 protein (Brassica rapa) - STRING interaction network
"Bra004998" - AT2G39960 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra004998AT2G39960 (E=1e-093) | microsomal signal peptidase 25 kDa subunit, putative (SPC25) (198 aa)    
Predicted Functional Partners:
Bra000810
AT4G04950 (E=4e-116) | thioredoxin family protein (476 aa)
     
      0.833
Bra031396
AT1G61790 (E=5e-139) | OST3/OST6 family protein (346 aa)
     
        0.656
Bra031396.1-P
AT1G61790 (E=5e-139) | OST3/OST6 family protein (346 aa)
     
        0.656
Bra016832
AT1G61790 (E=1e-101) | OST3/OST6 family protein (339 aa)
     
        0.656
Bra029532
AT4G04950 (E=5e-091) | thioredoxin family protein (339 aa)
       
      0.618
Bra028301
AT5G52240 (E=1e-102) MSBP1, ATMP1, AtMAPR5 | MSBP1 (membrane steroid binding protein 1); steroid binding (218 aa)
       
 
  0.534
Bra018028
AT3G48890 (E=6e-074) ATMP2, ATMAPR3, MSBP2, MAPR3 | ATMP2; heme binding (222 aa)
       
 
  0.528
Bra032055
AT2G24940 (E=6e-050) AtMAPR2 | AtMAPR2 (Arabidopsis thaliana membrane-associated progesterone binding protein 2); heme binding (100 aa)
       
 
  0.517
Bra019571
AT3G48890 (E=4e-039) ATMP2, ATMAPR3, MSBP2, MAPR3 | ATMP2; heme binding (132 aa)
       
 
  0.517
Bra020182
AT5G22290 (E=1e-158) anac089 | anac089 (Arabidopsis NAC domain containing protein 89); transcription factor (343 aa)
       
      0.489
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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