STRINGSTRING
Bra005000 protein (Brassica rapa) - STRING interaction network
"Bra005000" - AT2G39940 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra005000AT2G39940 (E=2e-311) COI1 | COI1 (CORONATINE INSENSITIVE 1); protein binding / ubiquitin-protein ligase (603 aa)    
Predicted Functional Partners:
Bra021281
AT3G17860 (E=3e-154) JAZ3, JAI3, TIFY6B | JAZ3 (JASMONATE-ZIM-DOMAIN PROTEIN 3) (353 aa)
       
  0.998
Bra022254
AT3G17860 (E=1e-135) JAZ3, JAI3, TIFY6B | JAZ3 (JASMONATE-ZIM-DOMAIN PROTEIN 3) (335 aa)
       
  0.997
Bra008231
AT1G75950 (E=2e-076) SKP1, ASK1, ATSKP1, SKP1A, UIP1 | SKP1 (S PHASE KINASE-ASSOCIATED PROTEIN 1); protein binding / ubiquitin-protein ligase (160 aa)
       
  0.982
Bra003735
AT1G75950 (E=9e-077) SKP1, ASK1, ATSKP1, SKP1A, UIP1 | SKP1 (S PHASE KINASE-ASSOCIATED PROTEIN 1); protein binding / ubiquitin-protein ligase (160 aa)
       
  0.982
Bra015880
AT1G74950 (E=4e-075) JAZ2, TIFY10B | TIFY10B (245 aa)
       
  0.977
Bra008172
AT1G19180 (E=8e-062) JAZ1, TIFY10A | JAZ1 (JASMONATE-ZIM-DOMAIN PROTEIN 1); protein binding (240 aa)
       
  0.977
Bra003778
AT1G74950 (E=6e-055) JAZ2, TIFY10B | TIFY10B (222 aa)
       
  0.976
Bra031065
AT1G74950 (E=7e-073) JAZ2, TIFY10B | TIFY10B (273 aa)
       
  0.972
Bra025713
AT1G19180 (E=8e-084) JAZ1, TIFY10A | JAZ1 (JASMONATE-ZIM-DOMAIN PROTEIN 1); protein binding (254 aa)
       
  0.972
Bra016520
AT1G19180 (E=8e-087) JAZ1, TIFY10A | JAZ1 (JASMONATE-ZIM-DOMAIN PROTEIN 1); protein binding (259 aa)
       
  0.972
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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