STRINGSTRING
Bra005002 protein (Brassica rapa) - STRING interaction network
"Bra005002" - AT2G39920 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra005002AT2G39920 (E=5e-104) | acid phosphatase class B family protein (251 aa)    
Predicted Functional Partners:
Bra004964
AT2G40390 (E=6e-244) | unknown protein (470 aa)
           
  0.476
Bra004596
AT2G41050 (E=5e-182) | PQ-loop repeat family protein / transmembrane family protein (382 aa)
           
  0.476
Bra039847
AT2G15760 (E=2e-105) | calmodulin-binding protein (302 aa)
           
  0.456
Bra039214
AT2G23790 (E=1e-156) | unknown protein (336 aa)
           
  0.456
Bra036727
AT2G19180 (E=3e-051) | unknown protein (177 aa)
           
  0.456
Bra022542
AT5G51260 (E=2e-125) | acid phosphatase, putative (260 aa)
           
  0.456
Bra012168
AT2G19180 (E=7e-059) | unknown protein (189 aa)
           
  0.456
Bra011198
AT2G23940 (E=4e-070) | unknown protein (220 aa)
           
  0.456
Bra004816
AT2G44220 (E=7e-206) | unknown protein (402 aa)
           
  0.456
Bra004576
AT2G40520 (E=3e-177) | nucleotidyltransferase family protein (500 aa)
           
  0.451
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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