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Bra005013 protein (Brassica rapa) - STRING interaction network
"Bra005013" - AT2G39795 in Brassica rapa
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra005013AT2G39795 (E=2e-093) | mitochondrial glycoprotein family protein / MAM33 family protein (248 aa)    
Predicted Functional Partners:
Bra014107
AT2G26060 (E=4e-080) emb1345 | emb1345 (embryo defective 1345); nucleotide binding ; Essential component of the cytosolic iron-sulfur (Fe/S) protein assembly machinery. Required for the maturation of extramitochondrial Fe/S proteins (633 aa)
       
      0.621
Bra007771
AT2G26060 (E=3e-173) emb1345 | emb1345 (embryo defective 1345); nucleotide binding ; Essential component of the cytosolic iron-sulfur (Fe/S) protein assembly machinery. Required for the maturation of extramitochondrial Fe/S proteins (346 aa)
       
      0.621
Bra040632
AT1G66740 (E=4e-090) AtSP7, SP7, SGA2, ASF1A | SGA2 (196 aa)
       
      0.520
Bra004186
AT1G66740 (E=1e-082) AtSP7, SP7, SGA2, ASF1A | SGA2 (199 aa)
       
      0.520
Bra031676
AT1G09640 (E=9e-204) | elongation factor 1B-gamma, putative / eEF-1B gamma, putative (413 aa)
     
   
  0.458
Bra030790
AT1G57720 (E=6e-190) | elongation factor 1B-gamma, putative / eEF-1B gamma, putative (566 aa)
     
   
  0.458
Bra020005
AT1G09640 (E=4e-193) | elongation factor 1B-gamma, putative / eEF-1B gamma, putative (413 aa)
     
   
  0.458
Bra023536
AT5G15750 (E=5e-084) | RNA-binding S4 domain-containing protein (182 aa)
     
      0.440
Bra006320
AT5G15750 (E=3e-093) | RNA-binding S4 domain-containing protein (182 aa)
     
      0.440
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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