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Bra005014 protein (Brassica rapa) - STRING interaction network
"Bra005014" - AT2G39770 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra005014AT2G39770 (E=3e-194) CYT1, VTC1, SOZ1, EMB101, GMP1 | CYT1 (CYTOKINESIS DEFECTIVE 1); mannose-1-phosphate guanylyltransferase/ nucleotidyltransferase (361 aa)    
Predicted Functional Partners:
Bra008171
AT1G74910 (E=5e-195) | ADP-glucose pyrophosphorylase family protein (456 aa)
   
0.962
Bra015883
AT1G74910 (E=2e-223) | ADP-glucose pyrophosphorylase family protein (413 aa)
   
0.961
Bra030345
AT2G04650 (E=7e-222) | ADP-glucose pyrophosphorylase family protein (409 aa)
   
0.961
Bra031808
AT5G66240 (E=4e-169) | transducin family protein / WD-40 repeat family protein (335 aa)
       
      0.902
Bra023473
AT5G14530 (E=6e-182) | transducin family protein / WD-40 repeat family protein (332 aa)
       
      0.902
Bra025828
AT1G20575 (E=1e-086) | dolichyl-phosphate beta-D-mannosyltransferase, putative / dolichol-phosphate mannosyltransferase, putative / mannose-P-dolichol synthase, putative (204 aa)
   
  0.872
Bra012235
AT1G20575 (E=6e-134) | dolichyl-phosphate beta-D-mannosyltransferase, putative / dolichol-phosphate mannosyltransferase, putative / mannose-P-dolichol synthase, putative (247 aa)
   
  0.872
Bra026355
AT4G27370 (E=0.0) VIIIB, ATVIIIB | VIIIB; motor (1244 aa)
   
 
  0.853
Bra026714
AT1G16570 (E=6e-258) | glycosyl transferase family 1 protein (465 aa)
   
  0.827
Bra026039
AT1G16570 (E=5e-253) | glycosyl transferase family 1 protein (511 aa)
   
  0.827
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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