STRINGSTRING
Bra005018 protein (Brassica rapa) - STRING interaction network
"Bra005018" - AT2G39750 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra005018AT2G39750 (E=0.0) | dehydration-responsive family protein (694 aa)    
Predicted Functional Partners:
Bra032820
AT1G27340 (E=1e-240) | F-box family protein (465 aa)
           
  0.483
Bra030038
AT1G27340 (E=1e-218) | F-box family protein (462 aa)
           
  0.483
Bra040446
AT3G63340 (E=8e-213) | protein phosphatase 2C-related / PP2C-related (1059 aa)
           
  0.465
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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