STRINGSTRING
Bra005026 protein (Brassica rapa) - STRING interaction network
"Bra005026" - AT2G39670 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra005026AT2G39670 (E=2e-199) | radical SAM domain-containing protein (430 aa)    
Predicted Functional Partners:
Bra008427
AT1G79620 (E=2e-194) | leucine-rich repeat transmembrane protein kinase, putative (1465 aa)
         
  0.716
Bra000209
AT2G40860 (E=0.0) | protein kinase family protein / protein phosphatase 2C ( PP2C) family protein (655 aa)
         
  0.716
Bra011081
AT4G29060 (E=1e-177) emb2726 | emb2726 (embryo defective 2726); RNA binding / translation elongation factor ; Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome (1770 aa)
   
        0.695
Bra040427
AT3G63190 (E=1e-096) RRF | RRF (RIBOSOME RECYCLING FACTOR, CHLOROPLAST PRECURSOR) (305 aa)
   
   
  0.619
Bra007733
AT3G63190 (E=4e-084) RRF | RRF (RIBOSOME RECYCLING FACTOR, CHLOROPLAST PRECURSOR) (264 aa)
   
   
  0.619
Bra005865
AT5G05740 (E=5e-216) ATEGY2, EGY2 | EGY2; metalloendopeptidase (529 aa)
   
        0.589
Bra014799
AT3G54690 (E=9e-167) | sugar isomerase (SIS) domain-containing protein / CBS domain-containing protein (338 aa)
              0.556
Bra003192
AT3G54690 (E=2e-174) | sugar isomerase (SIS) domain-containing protein / CBS domain-containing protein (347 aa)
              0.556
Bra032652
AT1G01860 (E=6e-151) PFC1 | PFC1 (PALEFACE 1); mRNA (2’-O-methyladenosine-N6-)-methyltransferase (588 aa)
   
   
  0.554
Bra027795
AT1G63660 (E=6e-286) | GMP synthase (glutamine-hydrolyzing), putative / glutamine amidotransferase, putative (530 aa)
   
   
  0.551
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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