STRINGSTRING
Bra005031 protein (Brassica rapa) - STRING interaction network
"Bra005031" - AT2G39550 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra005031AT2G39550 (E=2e-172) ATGGT-IB, GGB, PGGT-I | PGGT-I; CAAX-protein geranylgeranyltransferase/ protein heterodimerization (328 aa)    
Predicted Functional Partners:
Bra039538
AT3G59380 (E=2e-158) FTA, PLP, ATFTA, PFT/PGGT-IALPHA | FTA (FARNESYLTRANSFERASE A); farnesyltranstransferase/ protein heterodimerization/ protein prenyltransferase (325 aa)
     
  0.981
Bra012780
AT4G15550 (E=4e-153) IAGLU | IAGLU (INDOLE-3-ACETATE BETA-D-GLUCOSYLTRANSFERASE); UDP-glycosyltransferase/ transferase, transferring glycosyl groups (581 aa)
     
  0.980
Bra031488
AT3G59380 (E=3e-016) FTA, PLP, ATFTA, PFT/PGGT-IALPHA | FTA (FARNESYLTRANSFERASE A); farnesyltranstransferase/ protein heterodimerization/ protein prenyltransferase (70 aa)
     
  0.979
Bra033742
AT1G10095 (E=2e-174) | protein prenyltransferase (421 aa)
     
  0.962
Bra027545
AT1G10095 (E=2e-092) | protein prenyltransferase (329 aa)
     
  0.962
Bra019225
AT4G24490 (E=2e-310) | protein prenyltransferase (679 aa)
     
  0.962
Bra013807
AT4G24490 (E=0.0) | protein prenyltransferase (679 aa)
     
  0.962
Bra029586
AT3G06540 (E=1e-231) | GDP dissociation inhibitor family protein / Rab GTPase activator family protein (567 aa)
       
  0.825
Bra040869
AT2G17800 (E=2e-078) ARAC1, ATGP2, ATRAC1, ROP3, ATROP3 | ARAC1; GTP binding (175 aa)
       
 
  0.811
Bra038892
AT2G17800 (E=9e-097) ARAC1, ATGP2, ATRAC1, ROP3, ATROP3 | ARAC1; GTP binding (197 aa)
       
 
  0.811
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
Server load: low (12%) [HD]